STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM98472.1Hypothetical protein. (64 aa)    
Predicted Functional Partners:
cofE
F420-0:gamma-glutamyl ligase; KEGG: mth:MTH1019 1.7e-49 hypothetical protein K01932; COG: COG1478 Uncharacterized conserved protein; Psort location: Cytoplasmic, score:8.96.
       0.545
EDM98474.1
Hypothetical protein; Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins; Belongs to the prokaryotic riboflavin transporter (P-RFT) (TC 2.A.87) family.
       0.545
cofE-2
F420-0:gamma-glutamyl ligase; KEGG: mth:MTH1019 1.4e-54 hypothetical protein K01932; COG: COG1478 Uncharacterized conserved protein.
       0.545
EDM98476.1
Putative F420 biosynthesis protein FbiB domain protein; KEGG: mav:MAV_4225 5.2e-20 F420-0:gamma-glutamyl ligase K01932; COG: COG1478 Uncharacterized conserved protein; Psort location: Cytoplasmic, score:8.96.
       0.528
EDM98470.1
2-phospho-L-lactate guanylyltransferase CofC; COG: COG1920 Uncharacterized conserved protein.
       0.484
EDM98471.1
YheO-like protein; COG: COG2964 Uncharacterized protein conserved in bacteria.
       0.484
cofD
KEGG: sco:SCO3036 1.6e-60 SCE34.17; LPPG:FO 2-phopspho-L-lactate transferase K00924; COG: COG0391 Uncharacterized conserved protein; Psort location: Cytoplasmic, score:8.96.
       0.478
EDM98469.1
Putative F420-dependent oxidoreductase, Rv2161c family; KEGG: fal:FRAAL3305 3.4e-28 putative alkanesulfonate monooxygenase (FMNH2-dependent aliphatic sulfonate monooxygenase 1) K04091; COG: COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
       0.407
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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