STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM98354.1BRO family, N-terminal domain protein; COG: COG3617 Prophage antirepressor. (248 aa)    
Predicted Functional Partners:
EDM98353.1
Hypothetical protein; COG: NOG34358 non supervised orthologous group.
 
    0.702
EDM98356.1
Hypothetical protein.
 
     0.695
EDM98357.1
Hypothetical protein; COG: COG3505 Type IV secretory pathway, VirD4 components.
 
     0.559
EDM98355.1
Hypothetical protein; KEGG: eci:UTI89_C1627 8.7e-09 entS; EntS/YbdA MFS transporter; COG: NOG20194 non supervised orthologous group.
  
    0.550
EDM98352.1
Hypothetical protein.
       0.516
EDN01399.1
DNA-binding helix-turn-helix protein; KEGG: spj:MGAS2096_Spy0269 0.0023 dacA2; D-alanyl-D-alanine carboxypeptidase K01286; COG: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); Psort location: Cytoplasmic, score:8.96.
  
  
 0.498
EDN00994.1
Helicase C-terminal domain protein; KEGG: chu:CHU_1468 1.2e-08 dpn; possible adenine-specific DNA methylase K00599; COG: COG4646 DNA methylase.
 
     0.459
EDM99461.1
Helicase C-terminal domain protein; KEGG: chu:CHU_1468 1.9e-09 dpn; possible adenine-specific DNA methylase K00599; COG: COG4646 DNA methylase.
 
     0.432
lexA
Putative LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
  
  
 0.418
EDN00509.1
Putative toxin-antitoxin system, toxin component; COG: NOG38678 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
 
     0.414
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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