STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM98359.1Hypothetical protein. (51 aa)    
Predicted Functional Partners:
EDM98360.1
Reverse transcriptase (RNA-dependent DNA polymerase); KEGG: rha:RHA1_ro10191 3.5e-42 RNA-directed DNA polymerase K00986; COG: COG3344 Retron-type reverse transcriptase.
       0.554
EDM98361.1
Hypothetical protein.
       0.497
EDM98362.1
Hypothetical protein; COG: COG3505 Type IV secretory pathway, VirD4 components.
       0.443
EDM98363.1
Hypothetical protein; KEGG: spj:MGAS2096_Spy1129 2.9e-31 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K01957; Psort location: CytoplasmicMembrane, score:9.50.
       0.443
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.