STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM98333.1MobA/MobL family protein; KEGG: ret:RHE_CH00726 1.9e-10 traAch; conjugal transfer protein A K01144; COG: COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member; Psort location: Cytoplasmic, score:8.96. (361 aa)    
Predicted Functional Partners:
EDM98332.1
Reverse transcriptase (RNA-dependent DNA polymerase); KEGG: rha:RHA1_ro10191 5.0e-34 RNA-directed DNA polymerase K00986; COG: COG3344 Retron-type reverse transcriptase.
  
    0.776
EDM99497.1
Hypothetical protein; COG: COG1961 Site-specific recombinases, DNA invertase Pin homologs.
  
     0.771
EDM98338.1
IstB-like ATP-binding protein; KEGG: spi:MGAS10750_Spy1680 1.7e-35 replicative DNA helicase K01529; COG: COG1484 DNA replication protein; Psort location: Cytoplasmic, score:8.96.
  
     0.763
EDM99733.1
IstB-like ATP-binding protein; KEGG: spi:MGAS10750_Spy1680 1.3e-35 replicative DNA helicase K01529; COG: COG1484 DNA replication protein; Psort location: Cytoplasmic, score:8.96.
  
     0.762
EDM99496.1
Hypothetical protein.
  
     0.665
EDM98337.1
Phage replisome organizer N-terminal domain protein; COG: COG3935 Putative primosome component and related proteins.
 
     0.649
EDM99732.1
Phage replisome organizer N-terminal domain protein; COG: COG3935 Putative primosome component and related proteins.
 
     0.635
EDM98331.1
Hypothetical protein.
       0.554
EDM98334.1
Hypothetical protein.
       0.527
dnaN
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.525
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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