STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM98103.1ParB-like protein; KEGG: pub:SAR11_0354 3.5e-08 parB; chromosome partitioning protein K03497; COG: COG1475 Predicted transcriptional regulators; Psort location: Periplasmic, score:9.83; Belongs to the ParB family. (341 aa)    
Predicted Functional Partners:
EDM98349.1
Hypothetical protein; COG: COG1475 Predicted transcriptional regulators.
 
     0.922
EDM99477.1
Hypothetical protein; COG: COG1475 Predicted transcriptional regulators.
 
     0.912
EDN01713.1
CobQ/CobB/MinD/ParA nucleotide binding domain protein; KEGG: cch:Cag_1803 1.4e-68 ATPase, ParA family K03496; COG: COG1192 ATPases involved in chromosome partitioning; Psort location: Cytoplasmic, score:8.96.
 
 
 0.886
EDN00990.1
Hypothetical protein; KEGG: fal:FRAAL2247 4.1e-16 chromosome partitioning protein (partial match) K08253; COG: COG1192 ATPases involved in chromosome partitioning.
 
 
 0.874
EDN01650.1
Hypothetical protein; KEGG: fal:FRAAL2247 8.1e-15 chromosome partitioning protein (partial match) K08253; COG: COG1192 ATPases involved in chromosome partitioning.
 
 
 0.869
EDM97305.1
Hypothetical protein; COG: COG1475 Predicted transcriptional regulators.
 
     0.689
EDM97849.1
Hypothetical protein; COG: COG1475 Predicted transcriptional regulators.
 
     0.659
gidB
16S rRNA methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
  
  
 0.492
EDM97603.1
Hypothetical protein; KEGG: rpb:RPB_1171 0.0054 pseudouridine synthase, Rsu K06178; COG: COG0791 Cell wall-associated hydrolases (invasion-associated proteins).
  
     0.472
EDM98104.1
Hypothetical protein.
       0.470
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.