STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sdaAAKEGG: bsu:BG13398 8.4e-64 sdaAA, ylpA; L-serine dehydratase alpha subunit K01752; COG: COG1760 L-serine deaminase; Belongs to the iron-sulfur dependent L-serine dehydratase family. (285 aa)    
Predicted Functional Partners:
sdaAB
KEGG: cpf:CPF_2959 7.4e-49 sdhB; L-serine dehydratase, iron-sulfur-dependent, beta subunit K01752; COG: COG1760 L-serine deaminase.
 
 0.999
glyA
Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
  
 
 0.927
ilvA
KEGG: fnu:FN1411 7.5e-111 threonine dehydratase K01754; COG: COG1171 Threonine dehydratase; Psort location: Cytoplasmic, score:8.96.
  
 
 0.863
EDN00590.1
KEGG: efa:EF2579 3.8e-148 diaminopropionate ammonia-lyase, putative; COG: COG1171 Threonine dehydratase.
  
 
 0.851
thrH
KEGG: hch:HCH_02661 8.8e-53 thrH; phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein K01079; COG: COG0560 Phosphoserine phosphatase; Psort location: Cytoplasmic, score:8.96.
   
 
 0.833
cysE
KEGG: chy:CHY_2339 1.6e-60 cysE; serine acetyltransferase K00640; COG: COG1045 Serine acetyltransferase; Psort location: Cytoplasmic, score:9.26.
     
 0.832
EDM98051.1
KEGG: mta:Moth_1307 1.8e-77 homoserine dehydrogenase K00003; COG: COG0460 Homoserine dehydrogenase; Psort location: Cytoplasmic, score:8.96.
   
 
 0.828
metA
Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
     
 0.825
pdxB
KEGG: gme:Gmet_2695 1.7e-56 glycerate dehydrogenase K00018; COG: KOG0067 Transcription factor CtBP; Psort location: Cytoplasmic, score:9.97; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 
 0.824
EDM97935.1
Glyoxalase family protein; KEGG: fnu:FN0356 2.2e-40 lactoylglutathione lyase K01759; COG: COG0346 Lactoylglutathione lyase and related lyases; Psort location: Cytoplasmic, score:8.96.
  
 
  0.811
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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