STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM97774.1Metallo-beta-lactamase domain protein; KEGG: shn:Shewana3_0537 1.6e-94 aspartate kinase K00928; COG: COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing; Psort location: Cytoplasmic, score:8.96. (531 aa)    
Predicted Functional Partners:
EDN00968.1
Hypothetical protein; COG: NOG13348 non supervised orthologous group.
    
 0.998
gpmI
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
   
 0.996
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
  0.988
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.983
EDM97743.1
Hypothetical protein; KEGG: chu:CHU_2979 1.2e-17 conserved hypothetical protein, with TPR repeat; COG: COG4995 Uncharacterized protein conserved in bacteria; Psort location: CytoplasmicMembrane, score:9.27.
  
 0.978
EDM99685.1
Hypothetical protein.
  
 0.977
rpoB
KEGG: tte:TTE2301 1.3e-63 rpoB; DNA-directed RNA polymerase beta subunit/140 kD subunit (split gene in Mjan, Mthe, Aful) K03043; COG: COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit; Psort location: Cytoplasmic, score:9.97.
   
 0.933
rpoB-2
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.933
EDM97704.1
Putative DNA sulfur modification protein DndD; KEGG: reh:H16_B0196 1.7e-104 sbcC; DNA repair exonuclease, SbcC K01146; COG: COG0419 ATPase involved in DNA repair; Psort location: Extracellular, score:8.89.
   
 0.888
EDN01372.1
Ser/Thr phosphatase family protein; KEGG: gox:GOX1019 1.9e-27 putative exonuclease K01146; COG: COG0420 DNA repair exonuclease; Psort location: Cytoplasmic, score:8.96.
  
 0.787
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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