STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM97794.1Hypothetical protein; KEGG: swo:Swol_0093 3.6e-06 phosphoprotein phosphatase K01090; COG: NOG28446 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96. (391 aa)    
Predicted Functional Partners:
EDM98699.1
STAS domain protein; KEGG: ava:Ava_0744 6.9e-07 anti-sigma-factor antagonist (STAS) and sugar transfersase K00996; COG: COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).
  
 0.982
EDM97795.1
Hypothetical protein; KEGG: cno:NT01CX_1006 1.9e-28 hydrogenase K00532; COG: COG4624 Iron only hydrogenase large subunit, C-terminal domain; Psort location: Cytoplasmic, score:8.96.
 
     0.960
EDM98501.1
HD domain protein; KEGG: ava:Ava_1777 1.3e-20 metal dependent phosphohydrolase, HD region with response regulator receiver modulation K07814; COG: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; Psort location: Cytoplasmic, score:8.96.
  
 
 0.954
EDM99358.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: mav:MAV_0432 3.1e-11 serine/threonine-protein kinase RsbT K08282; COG: COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase); Psort location: Cytoplasmic, score:8.96.
 
 0.921
EDM98859.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: syn:slr2104 3.8e-63 hik22; two-component hybrid histidine kinase K02486; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score:7.88.
  
 
 0.898
EDM99964.1
Hypothetical protein; KEGG: cvi:CV0882 2.3e-07 probable sensor/response regulator hybrid protein; COG: COG0642 Signal transduction histidine kinase.
  
 
 0.894
spoIIAB
Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
 0.886
EDN00982.1
Diguanylate cyclase (GGDEF) domain protein; KEGG: shn:Shewana3_3829 1.4e-41 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) K01745; COG: COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain; Psort location: Cytoplasmic, score:8.96.
  
  
 0.861
EDM99963.1
HD domain protein; KEGG: ava:Ava_1777 6.1e-45 metal dependent phosphohydrolase, HD region with response regulator receiver modulation K07814; COG: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; Psort location: Cytoplasmic, score:9.97.
  
 
 0.841
EDM98872.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: spj:MGAS2096_Spy1752 2.0e-48 ihk; two-component system histidine kinase; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score:9.82.
  
 
 0.840
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.