STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM97931.1Transporter, major facilitator family protein; KEGG: eci:UTI89_C3355 0.00053 nupG; transport of nucleosides, permease protein K03289; COG: COG0477 Permeases of the major facilitator superfamily; Psort location: CytoplasmicMembrane, score:10.00. (409 aa)    
Predicted Functional Partners:
EDM97932.1
Hypothetical protein.
       0.768
EDN00360.1
5'-nucleotidase, C-terminal domain protein; KEGG: sat:SYN_02264 2.6e-62 UDP-sugar diphosphatase; Belongs to the 5'-nucleotidase family.
   
 
  0.757
EDM97933.1
MBOAT family protein; KEGG: pen:PSEEN4543 1.8e-84 algI; alginate O-acetylation protein AlgI K00680; COG: COG1696 Predicted membrane protein involved in D-alanine export; Psort location: CytoplasmicMembrane, score:10.00; Belongs to the membrane-bound acyltransferase family.
       0.751
EDM97934.1
COG: COG3274 Uncharacterized protein conserved in bacteria; Psort location: CytoplasmicMembrane, score:10.00.
 
     0.733
EDM97935.1
Glyoxalase family protein; KEGG: fnu:FN0356 2.2e-40 lactoylglutathione lyase K01759; COG: COG0346 Lactoylglutathione lyase and related lyases; Psort location: Cytoplasmic, score:8.96.
     
 0.665
EDM97936.1
Hypothetical protein.
       0.656
EDM98264.1
TQXA domain protein; COG: COG4932 Predicted outer membrane protein; Psort location: Extracellular, score:9.65.
  
     0.520
EDN02063.1
Bacterial group 2 Ig-like protein; KEGG: chu:CHU_1335 2.4e-07 CHU large protein; endoglucanase-related protein, glucosyl hydrolase family 9 protein K01238; COG: COG5492 Bacterial surface proteins containing Ig-like domains.
  
     0.496
EDN00429.1
Cna protein B-type domain protein; COG: COG4932 Predicted outer membrane protein.
  
     0.493
mraW
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
     
 0.489
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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