STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM97942.1Penicillin-binding protein, transpeptidase domain protein; KEGG: swo:Swol_0820 3.6e-95 peptidoglycan glycosyltransferase K05364; COG: COG0768 Cell division protein FtsI/penicillin-binding protein 2; Psort location: CytoplasmicMembrane, score:8.02. (793 aa)    
Predicted Functional Partners:
EDM98399.1
FHA domain protein; KEGG: ana:all0743 8.3e-05 cyaD; adenylate cyclase K01768; COG: COG0772 Bacterial cell division membrane protein; Psort location: CytoplasmicMembrane, score:10.00; Belongs to the SEDS family.
 
 0.988
EDM98058.1
Penicillin-binding protein, 1A family; KEGG: tte:TTE0314 9.0e-108 mrcA; Membrane carboxypeptidase (penicillin-binding protein) K05366; COG: COG0744 Membrane carboxypeptidase (penicillin-binding protein); Psort location: CytoplasmicMembrane, score:9.98.
 
 0.988
ftsW
COG: COG0772 Bacterial cell division membrane protein; Psort location: CytoplasmicMembrane, score:10.00; Belongs to the SEDS family.
 
 0.987
EDM97948.1
POTRA domain protein, FtsQ-type; Essential cell division protein.
 
 
 0.973
EDM98221.1
Cell cycle protein, FtsW/RodA/SpoVE family; COG: COG0772 Bacterial cell division membrane protein; Psort location: CytoplasmicMembrane, score:10.00; Belongs to the SEDS family.
 
 0.966
murE-2
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
  
 0.940
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
 
 
 0.929
mraY
phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
  
 0.912
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
 
 0.895
EDM98480.1
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: tte:TTE1314 2.8e-79 dacC2; D-alanyl-D-alanine carboxypeptidase K07258; COG: COG1686 D-alanyl-D-alanine carboxypeptidase; Psort location: CytoplasmicMembrane, score:8.60; Belongs to the peptidase S11 family.
 
 0.894
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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