STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM97683.1Hypothetical protein; COG: COG4832 Uncharacterized conserved protein; Psort location: Cytoplasmic, score:8.96. (211 aa)    
Predicted Functional Partners:
EDM97682.1
TfoX N-terminal domain protein; COG: COG3070 Regulator of competence-specific genes; Psort location: Cytoplasmic, score:8.96.
     0.943
EDM97681.1
HTH domain protein; COG: COG2378 Predicted transcriptional regulator.
 
     0.889
EDM97684.1
Hypothetical protein; COG: NOG34233 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
       0.785
EDM97679.1
Acetyltransferase, GNAT family; KEGG: fnu:FN1384 9.7e-47 IAA acetyltransferase K00680; COG: COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; Psort location: Cytoplasmic, score:8.96.
 
     0.600
EDM97680.1
Riboflavin biosynthesis protein RibD C-terminal domain protein; KEGG: chu:CHU_1297 8.6e-23 dfr; dihydrofolate reductase family protein K00287; COG: COG0262 Dihydrofolate reductase.
       0.534
mgtA
Magnesium-importing ATPase; KEGG: cpf:CPF_1153 6.3e-217 mgtA; magnesium-translocating P-type ATPase K01531; COG: COG0474 Cation transport ATPase; Psort location: CytoplasmicMembrane, score:10.00.
       0.496
EDM97686.1
Transcriptional regulatory protein, C-terminal domain protein; KEGG: fal:FRAAL1628 3.2e-16 response regulator in two-component regulatory system; COG: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Psort location: Cytoplasmic, score:9.26.
       0.467
EDN02099.1
COG: COG4905 Predicted membrane protein; Psort location: CytoplasmicMembrane, score:9.50.
  
     0.411
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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