STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM97696.1Phosphodiesterase family protein; KEGG: sru:SRU_1938 3.3e-14 phosphoesterase, putative subfamily; COG: COG0622 Predicted phosphoesterase; Psort location: Cytoplasmic, score:8.96. (152 aa)    
Predicted Functional Partners:
EDN01278.1
Hypothetical protein.
    
   0.775
EDN00483.1
Ankyrin repeat protein; KEGG: ptr:469607 9.2e-05 LOC469607; COG: KOG4369 RTK signaling protein MASK/UNC-44; Psort location: Cytoplasmic, score:8.96.
    
   0.775
EDM97697.1
Hypothetical protein.
       0.774
rdgB
Non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.
  
  
 0.774
EDN01036.1
Putative transposase, IS4 family; COG: COG3039 Transposase and inactivated derivatives, IS5 family.
  
     0.594
EDN01034.1
Hypothetical protein; COG: COG3039 Transposase and inactivated derivatives, IS5 family.
  
     0.555
EDM97695.1
TipAS antibiotic-recognition domain protein; KEGG: eci:UTI89_C3737 1.6e-06 yhdM; Zn(II)-responsive regulator of ZntA; COG: COG0789 Predicted transcriptional regulators; Psort location: Cytoplasmic, score:8.96.
       0.535
EDM97698.1
DNA-binding helix-turn-helix protein; COG: COG1396 Predicted transcriptional regulators.
       0.469
ahpC
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
   
   0.455
EDM97397.1
Antioxidant, AhpC/TSA family; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
   
   0.455
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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