STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM97703.1Hypothetical protein. (34 aa)    
Predicted Functional Partners:
EDM97702.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.96.
       0.773
EDM97700.1
COG: COG4898 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score:8.96.
       0.689
EDM97701.1
Macro domain protein; KEGG: bur:Bcep18194_A6181 3.0e-43 Appr-1-p processing enzyme family K00985; COG: COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1.
       0.689
EDM97704.1
Putative DNA sulfur modification protein DndD; KEGG: reh:H16_B0196 1.7e-104 sbcC; DNA repair exonuclease, SbcC K01146; COG: COG0419 ATPase involved in DNA repair; Psort location: Extracellular, score:8.89.
       0.541
sbcD
Exonuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
       0.541
EDM97699.1
Hypothetical protein; COG: NOG17666 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
       0.491
EDM97706.1
HDIG domain protein; KEGG: ctc:CTC01205 6.5e-73 tRNA nucleotidyltransferase (CCA-adding enzyme) K00974; COG: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; Psort location: Cytoplasmic, score:8.96.
       0.467
EDM97707.1
Hypothetical protein; COG: COG1690 Uncharacterized conserved protein; Psort location: Cytoplasmic, score:8.96.
       0.425
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.