STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM97587.1Hypothetical protein; COG: COG3451 Type IV secretory pathway, VirB4 components. (756 aa)    
Predicted Functional Partners:
EDM97592.1
Hypothetical protein; COG: NOG28113 non supervised orthologous group; Psort location: CytoplasmicMembrane, score:10.00.
 
     0.898
EDM97593.1
Hypothetical protein; COG: NOG28113 non supervised orthologous group.
 
     0.885
EDM97586.1
NlpC/P60 family protein; KEGG: bat:BAS5084 3.4e-24 N-acetylmuramoyl-L-alanine amidase, C-terminus K01446; COG: COG0791 Cell wall-associated hydrolases (invasion-associated proteins).
    0.884
EDM97588.1
Hypothetical protein; COG: NOG33085 non supervised orthologous group.
     0.842
EDM97584.1
Hypothetical protein; COG: NOG36404 non supervised orthologous group.
 
     0.838
EDM98889.1
TraG family protein; COG: COG3505 Type IV secretory pathway, VirD4 components.
 
    0.769
EDM98329.1
TraG family protein; COG: COG3505 Type IV secretory pathway, VirD4 components.
 
    0.769
EDM97631.1
TraG family protein; COG: COG3505 Type IV secretory pathway, VirD4 components.
  
    0.769
EDM97307.1
TraG family protein; COG: COG3505 Type IV secretory pathway, VirD4 components.
 
    0.769
EDM97630.1
Hypothetical protein; COG: COG3505 Type IV secretory pathway, VirD4 components.
 
    0.768
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.