STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM97432.1Hypothetical protein; COG: COG2391 Predicted transporter component; Psort location: CytoplasmicMembrane, score:10.00. (388 aa)    
Predicted Functional Partners:
EDM97431.1
Hypothetical protein; COG: NOG13230 non supervised orthologous group; Belongs to the sulfur carrier protein TusA family.
 
  
 0.978
EDM97430.1
Hypothetical protein.
 
     0.943
EDM97434.1
KEGG: sat:SYN_01071 2.2e-88 cysteine desulfurase / selenocysteine lyase K04487:K01763; COG: COG0520 Selenocysteine lyase; Psort location: Cytoplasmic, score:8.96.
 
     0.855
EDM97433.1
Hypothetical protein.
       0.773
EDM97435.1
LysR substrate binding domain protein; KEGG: shn:Shewana3_3435 4.4e-15 transcriptional regulator, LysR family K06022; COG: COG0583 Transcriptional regulator; Psort location: Cytoplasmic, score:9.97; Belongs to the LysR transcriptional regulatory family.
 
     0.719
yedF
Selenium metabolism protein YedF; COG: NOG13230 non supervised orthologous group; Belongs to the sulfur carrier protein TusA family.
 
  
 0.704
selB
KEGG: dde:Dde_3173 1.2e-105 selenocysteine-specific translation elongation factor K03833; COG: COG3276 Selenocysteine-specific translation elongation factor; Psort location: CytoplasmicMembrane, score:10.00.
 
   
 0.457
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.411
EDN00669.1
2-hydroxyglutaryl-CoA dehydratase, D-component; KEGG: eci:UTI89_C5045 1.9e-57 yjiM; hypothetical protein YjiM K04111; COG: COG1775 Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB; Psort location: Cytoplasmic, score:8.96.
 
    0.402
gltA
KEGG: gka:GK1431 0. glutamate synthaselarge subunit K00265; COG: COG0069 Glutamate synthase domain 2; Psort location: Cytoplasmic, score:8.96.
      
 0.400
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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