STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM97407.1Acetyltransferase, GNAT family; KEGG: fnu:FN1384 0.00013 IAA acetyltransferase K00680; COG: COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; Psort location: Cytoplasmic, score:8.96. (176 aa)    
Predicted Functional Partners:
aroK-2
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
    
  0.860
nifJ
KEGG: ctc:CTC01741 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit.
    
  0.837
gltA
KEGG: gka:GK1431 0. glutamate synthaselarge subunit K00265; COG: COG0069 Glutamate synthase domain 2; Psort location: Cytoplasmic, score:8.96.
   
 
 0.814
EDM98987.1
Prephenate dehydratase; KEGG: sth:STH2692 1.0e-51 chorismate mutase/prephenate dehydratase K04518; COG: COG0077 Prephenate dehydratase; Psort location: Cytoplasmic, score:9.97.
    
  0.680
EDN00523.1
Methyltransferase domain protein; KEGG: son:SO2788 5.7e-58 rrmA; ribosomal RNA large subunit methyltransferase A K00563; COG: COG0500 SAM-dependent methyltransferases; Psort location: Cytoplasmic, score:8.96.
 
      0.650
EDM97408.1
DJ-1/PfpI family protein; KEGG: bcz:BCZK3357 1.2e-11 thiJ; 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; COG: COG0693 Putative intracellular protease/amidase.
 
     0.574
EDN00987.1
KEGG: pai:PAE1918 1.2e-07 mutT/nudix family protein K03574; COG: COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; Psort location: Cytoplasmic, score:8.96.
 
    0.520
argD
Aminotransferase, acetylornithine/succinylornithine family; KEGG: hdu:HD0892 1.7e-104 argD; acetylornithine aminotransferase K00818; COG: COG4992 Ornithine/acetylornithine aminotransferase; Psort location: Cytoplasmic, score:8.96; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
   
 
 0.511
speB
Agmatinase; KEGG: cpe:CPE0551 5.2e-87 speB; probable agmatinase K01480; COG: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; Psort location: Cytoplasmic, score:8.96; Belongs to the arginase family.
     
 0.506
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
     
 0.500
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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