Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EDS08722.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (193 aa)    
Predicted Functional Partners:
cheY
YcbB domain protein; KEGG: rha:RHA1_ro04741 1.2e-11 phoP; response regulator, two-component system K02483; COG: COG0784 FOG: CheY-like receiver; Psort location: Cytoplasmic, score: 8.87.
       0.570
GlnK
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: tte:TTE1202 1.3e-26 baeS6; Sensory transduction histidine kinases K07717; COG: COG0642 Signal transduction histidine kinase; Psort location: Cytoplasmic, score: 8.87.
       0.570
sigK
RNA polymerase sigma-K factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.532
pfoR
Perfringolysin O regulator protein; KEGG: mta:Moth_0013 2.0e-07 PTS fructose IIC component K02769:K02770; COG: COG1299 Phosphotransferase system, fructose-specific IIC component; Psort location: CytoplasmicMembrane, score: 9.99.
       0.505
EDS08719.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.505
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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