Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ytrA_3KEGG: bcz:BCZK3833 5.5e-12 transcriptional regulator, GntR family; COG: COG1725 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87. (122 aa)    
Predicted Functional Partners:
EDS08746.1
Hypothetical protein; COG: NOG21911 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.978
skfE
KEGG: hpa:HPAG1_1162 6.5e-41 ABC transporter, ATP-binding protein K06022; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
  
 0.974
ytrB_1
ABC transporter, ATP-binding protein; KEGG: fal:FRAAL3623 1.3e-26 putative ABC transporter (partial match); COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
    0.546
NatA_4
KEGG: afu:AF1021 5.2e-32 ABC transporter, ATP-binding protein K02017; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
    0.522
ytrB_2
KEGG: hpa:HPAG1_1162 1.9e-25 ABC transporter, ATP-binding protein K06022; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
    0.506
hrb
Rubredoxin; KEGG: sat:SYN_02123 4.7e-47 ferric-chelate reductase / rubredoxin K00521; COG: COG1773 Rubredoxin.
       0.455
EDS08762.1
KEGG: afu:AF1021 3.8e-36 ABC transporter, ATP-binding protein K02017; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
  
  
 0.440
drrA_2
KEGG: fal:FRAAL2549 1.2e-34 antibiotic resistance ATP-binding protein K06020; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
  
    0.430
YxlF_7
KEGG: noc:Noc_2142 8.6e-39 ABC transporter, ATPase subunit; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
  
    0.430
drrA_3
KEGG: rha:RHA1_ro04791 5.8e-43 ABC transporter, ATP-binding component K01990; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
  
    0.430
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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