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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hrbRubredoxin; KEGG: sat:SYN_02123 4.7e-47 ferric-chelate reductase / rubredoxin K00521; COG: COG1773 Rubredoxin. (218 aa)    
Predicted Functional Partners:
fprA1
Metallo-beta-lactamase domain protein; KEGG: eci:UTI89_C3072 1.2e-46 norV; anaerobic nitric oxide reductase flavorubredoxin; COG: COG0426 Uncharacterized flavoproteins; Psort location: Cytoplasmic, score: 8.87.
  
 0.936
nifJ
Pyruvate synthase; KEGG: cno:NT01CX_1854 0. nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase K00168; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
     
 0.774
Rbr
Rubrerythrin; KEGG: cpr:CPR_0938 2.1e-51 periplasmic [Fe] hydrogenase 1 K00532; COG: COG1592 Rubrerythrin; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.756
EDS06718.1
Rubredoxin; KEGG: cpr:CPR_0938 1.8e-219 periplasmic [Fe] hydrogenase 1 K00532; COG: COG4624 Iron only hydrogenase large subunit, C-terminal domain; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.593
petC1
FAD dependent oxidoreductase; KEGG: mma:MM1656 6.2e-84 oxidoreductase K00100; COG: COG0665 Glycine/D-amino acid oxidases (deaminating); Psort location: Cytoplasmic, score: 8.87.
 
  
 0.548
dfx_2
Superoxide reductase; KEGG: mta:Moth_1285 2.2e-10 desulfoferrodoxin K00518; COG: COG2033 Desulfoferrodoxin; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.540
argS
arginine--tRNA ligase; KEGG: fth:FTH_1544 4.9e-139 argS; arginine--tRNA ligase K01887; COG: COG0018 Arginyl-tRNA synthetase; Psort location: Cytoplasmic, score: 9.98.
       0.529
dfx_1
Putative superoxide reductase; KEGG: ppd:Ppro_1133 4.5e-17 desulfoferrodoxin K00518; COG: COG2033 Desulfoferrodoxin; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.521
alaS_2
DHHA1 domain protein; KEGG: bld:BLi02774 3.8e-45 hypothetical protein K01872; COG: COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain; Psort location: Cytoplasmic, score: 9.98.
       0.509
EDS08746.1
Hypothetical protein; COG: NOG21911 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
       0.455
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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