Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS08783.1Hypothetical protein; COG: NOG33085 non supervised orthologous group. (134 aa)    
Predicted Functional Partners:
EDS08782.1
Hypothetical protein; COG: COG3451 Type IV secretory pathway, VirB4 components.
     0.954
EDS08780.1
Hypothetical protein; KEGG: pca:Pcar_2039 0.00092 ribonuclease, Rne/Rng family protein; COG: COG0791 Cell wall-associated hydrolases (invasion-associated proteins); Psort location: Cytoplasmic, score: 8.87.
 
     0.947
EDS08784.1
Hypothetical protein; COG: NOG28113 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.929
EDS08778.1
Hypothetical protein; COG: NOG36404 non supervised orthologous group.
 
     0.923
EDS08779.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.921
yhdJ_4
KEGG: yps:YPTB1797 1.5e-64 putative DNA methyltransferase K07319; COG: COG0863 DNA modification methylase; Psort location: Cytoplasmic, score: 8.87; Belongs to the N(4)/N(6)-methyltransferase family.
 
     0.847
EDS08776.1
Hypothetical protein; KEGG: vfi:VFB02 0.0054 traC; DNA primase TraC; COG: NOG17367 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.811
topB_4
DNA topoisomerase; KEGG: efa:EF2312 1.2e-183 topB-2; DNA topoisomerase III K03169; COG: COG0550 Topoisomerase IA; Psort location: Cytoplasmic, score: 8.87.
 
    0.792
EDS05579.1
LPXTG-motif cell wall anchor domain protein; COG: NOG36404 non supervised orthologous group.
 
     0.780
EDS05575.1
Hypothetical protein; COG: COG3451 Type IV secretory pathway, VirB4 components; Psort location: Cytoplasmic, score: 8.87.
     0.773
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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