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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS08784.1Hypothetical protein; COG: NOG28113 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99. (289 aa)    
Predicted Functional Partners:
EDS08782.1
Hypothetical protein; COG: COG3451 Type IV secretory pathway, VirB4 components.
 
   
 0.937
EDS08783.1
Hypothetical protein; COG: NOG33085 non supervised orthologous group.
 
     0.930
EDS08778.1
Hypothetical protein; COG: NOG36404 non supervised orthologous group.
 
     0.897
EDS08780.1
Hypothetical protein; KEGG: pca:Pcar_2039 0.00092 ribonuclease, Rne/Rng family protein; COG: COG0791 Cell wall-associated hydrolases (invasion-associated proteins); Psort location: Cytoplasmic, score: 8.87.
 
     0.896
EDS08779.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.815
EDS08785.1
Hypothetical protein.
 
     0.811
EDS08800.1
Hypothetical protein.
 
     0.800
EDS08802.1
Hypothetical protein; COG: COG3505 Type IV secretory pathway, VirD4 components; Psort location: Cytoplasmic, score: 8.87.
 
     0.800
EDS05575.1
Hypothetical protein; COG: COG3451 Type IV secretory pathway, VirB4 components; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.787
topB_4
DNA topoisomerase; KEGG: efa:EF2312 1.2e-183 topB-2; DNA topoisomerase III K03169; COG: COG0550 Topoisomerase IA; Psort location: Cytoplasmic, score: 8.87.
 
     0.784
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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