STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS08787.1Hypothetical protein. (62 aa)    
Predicted Functional Partners:
dnaI_2
Hypothetical protein; KEGG: spi:MGAS10750_Spy1680 6.3e-43 replicative DNA helicase K01529; COG: COG1484 DNA replication protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.952
EDS08789.1
Phage replisome organizer N-terminal domain protein; COG: COG3935 Putative primosome component and related proteins.
 
     0.952
EDS08791.1
Relaxase/mobilization nuclease domain protein; COG: COG3843 Type IV secretory pathway, VirD2 components (relaxase); Psort location: Cytoplasmic, score: 8.87.
 
     0.948
EDS08792.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.944
EDS08786.1
Resolvase, N-terminal domain protein; COG: COG1961 Site-specific recombinases, DNA invertase Pin homologs; Psort location: Cytoplasmic, score: 8.87.
 
     0.885
EDS08794.1
Hypothetical protein.
 
     0.862
EDS08795.1
Sigma-70, region 4; COG: NOG16920 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.858
ubiE
Methyltransferase domain protein; KEGG: bce:BC0620 5.7e-10 ubiquinone/menaquinone biosynthesis methyltransferase UbiE K00599; COG: COG0500 SAM-dependent methyltransferases; Psort location: Cytoplasmic, score: 8.87.
 
     0.813
dnaI_1
Hypothetical protein; KEGG: spi:MGAS10750_Spy1680 5.5e-44 replicative DNA helicase K01529; COG: COG1484 DNA replication protein.
 
     0.791
EDS08790.1
Hypothetical protein.
       0.782
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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