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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS08804.1Hypothetical protein; KEGG: pub:SAR11_0588 0.0014 yqgN; 5-formyltetrahydrofolate cyclo-ligase-like protein K01934; COG: NOG11699 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (448 aa)    
Predicted Functional Partners:
EDS08803.1
Hypothetical protein; KEGG: bme:BMEI1837 0.00077 cellobiose-phosphorylase K00702; COG: COG1621 Beta-fructosidases (levanase/invertase); Psort location: Cytoplasmic, score: 8.87.
 
     0.848
yesO
ABC transporter, solute-binding protein; KEGG: eci:UTI89_C1581 1.1e-16 ycjN; putative ABC transporter periplasmic binding protein YcjN precursor K02027; COG: COG1653 ABC-type sugar transport system, periplasmic component.
 
     0.815
EDS08805.1
KEGG: efa:EF1922 5.5e-05 transcriptional regulator, LacI family/carbohydrate kinase, PfkB family protein K00852; COG: COG1609 Transcriptional regulators; Psort location: Cytoplasmic, score: 9.65.
 
     0.788
PurR
Hypothetical protein; COG: COG1609 Transcriptional regulators; Psort location: Cytoplasmic, score: 9.98.
 
     0.746
EDS06804.1
Alpha-L-fucosidase; KEGG: cpe:CPE0324 6.4e-137 probable glycosyl hydrolase K01206; COG: COG3669 Alpha-L-fucosidase; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.540
UgpA_5
ABC transporter, permease protein; KEGG: hpa:HPAG1_0451 0.0086 molybdenum ABC transporter ModB K06022; COG: COG1175 ABC-type sugar transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
       0.535
EDS08801.1
Hypothetical protein.
       0.505
EDS08802.1
Hypothetical protein; COG: COG3505 Type IV secretory pathway, VirD4 components; Psort location: Cytoplasmic, score: 8.87.
       0.505
araQ_6
COG: COG0395 ABC-type sugar transport system, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
       0.500
EDS08810.1
AP endonuclease, family 2; KEGG: ret:RHE_PF00383 1.7e-24 putative epimerase protein K01820; COG: COG1082 Sugar phosphate isomerases/epimerases; Psort location: Cytoplasmic, score: 8.87.
 
     0.495
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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