Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EDS08821.1Hypothetical protein; COG: COG4974 Site-specific recombinase XerD; Psort location: Cytoplasmic, score: 8.87. (113 aa)    
Predicted Functional Partners:
xerD_5
Hypothetical protein; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
 
     0.962
xerC_6
Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87.
  
     0.769
xerC_2
Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87.
  
     0.764
XerD_4
Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87.
  
     0.746
XerD_2
Phage integrase SAM-like domain protein; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87.
  
     0.730
EDS05959.1
General secretion pathway domain protein; COG: COG3267 Type II secretory pathway, component ExeA (predicted ATPase); Psort location: Cytoplasmic, score: 8.87.
 
     0.607
EDS06669.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.580
EDS05960.1
Integrase core domain protein; KEGG: nwi:Nwi_1018 8.9e-11 helix-turn-helix, fis-type K00986; COG: COG2801 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
 
     0.565
EDS06667.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.558
EDS08819.1
Virulence-associated protein E; COG: COG5545 Predicted P-loop ATPase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
       0.481
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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