Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS08594.1Hypothetical protein; COG: COG0714 MoxR-like ATPases; Psort location: Cytoplasmic, score: 8.87. (500 aa)    
Predicted Functional Partners:
EDS08595.1
COG: COG3864 Uncharacterized protein conserved in bacteria; Psort location: CytoplasmicMembrane, score: 9.76.
 
    0.935
EDS08596.1
Hypothetical protein; COG: COG3291 FOG: PKD repeat; Psort location: Cytoplasmic, score: 8.87.
 
     0.908
speA
Orn/Lys/Arg decarboxylase, major domain protein; KEGG: tte:TTE0093 2.5e-71 ldcC; Arginine/lysine/ornithine decarboxylases K01582; COG: COG1982 Arginine/lysine/ornithine decarboxylases; Psort location: Cytoplasmic, score: 8.87.
   
 
 0.602
EDS07091.1
Malic enzyme, NAD binding domain protein; KEGG: tte:TTE2332 9.9e-125 sfcA; malic enzyme K00027; COG: COG0281 Malic enzyme; Psort location: CytoplasmicMembrane, score: 9.97.
  
    0.550
brnQ
Branched-chain amino acid transport system II carrier protein; Component of the transport system for branched-chain amino acids.
       0.478
EDS08058.1
Hypothetical protein; COG: NOG34170 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.448
pucD
Selenium-dependent molybdenum hydroxylase 1; KEGG: rde:RD1_1533 8.1e-98 mop; aldehyde oxidoreductase, putative K00157; COG: COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs; Psort location: CytoplasmicMembrane, score: 9.49.
     
 0.424
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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