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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
brpA_1Cell envelope-like function transcriptional attenuator common domain protein; KEGG: ava:Ava_1873 2.8e-05 peptidoglycan-binding domain 1; COG: COG1316 Transcriptional regulator; Psort location: Cytoplasmic, score: 8.87. (450 aa)    
Predicted Functional Partners:
WcaJ
KEGG: tcx:Tcr_1675 1.8e-70 undecaprenyl-phosphate galactosephosphotransferase K03606; COG: COG2148 Sugar transferases involved in lipopolysaccharide synthesis; Psort location: CytoplasmicMembrane, score: 9.99.
 
   
 0.813
EDS08607.1
Cohesin domain protein; KEGG: bce:BC5339 8.8e-07 DNA-directed RNA polymerase delta chain K03048; COG: COG5129 Nuclear protein with HMG-like acidic region.
 
     0.685
EDS08609.1
Glycosyltransferase, group 2 family protein; KEGG: stm:STM2085 7.7e-54 rfbN; LPS side chain defect: rhamnosyl transferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87.
 
     0.667
brpA_2
Cell envelope-like function transcriptional attenuator common domain protein; KEGG: ctc:CTC02342 0.0065 glycine betaine transport ATP-binding protein K02000; COG: COG1316 Transcriptional regulator.
 
    
0.576
EDS08610.1
Hypothetical protein; COG: NOG19789 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
       0.529
WbbL
KEGG: hne:HNE_0805 4.1e-39 glycosyl transferase, group 2 family protein K00754; COG: COG1216 Predicted glycosyltransferases.
 
     0.482
comEA
COG: COG1555 DNA uptake protein and related DNA-binding proteins; Psort location: CytoplasmicMembrane, score: 9.49.
 
     0.452
sepF
Hypothetical protein; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.
  
   
 0.434
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.405
codY
GTP-sensing transcriptional pleiotropic repressor CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; Belongs to the CodY family.
  
   
 0.402
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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