Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS08622.1IS66 family element, transposase; COG: COG3436 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87. (540 aa)    
Predicted Functional Partners:
EDS08624.1
IS66 family element, Orf2 protein; COG: COG3436 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
 
     0.928
EDS06500.1
IS66 family element, Orf2 protein; COG: COG3436 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
 
     0.778
EDS05645.1
IS66 family element, Orf2 protein; COG: COG3436 Transposase and inactivated derivatives; Psort location: Cytoplasmic, score: 8.87.
 
     0.778
EDS08625.1
Hypothetical protein.
 
     0.772
EDS08623.1
Hypothetical protein.
       0.689
mshA_1
Glycosyltransferase, group 1 family protein; KEGG: lwe:lwe2504 1.3e-05 cpoA; glycosyl transferase; COG: COG0438 Glycosyltransferase; Psort location: Cytoplasmic, score: 8.87.
       0.418
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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