Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EDS08643.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (181 aa)    
Predicted Functional Partners:
EDS08645.1
Phage minor structural protein, N-terminal domain protein; COG: COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase); Psort location: Cytoplasmic, score: 8.87.
      0.933
EDS08647.1
Phage tail tape measure protein, TP901 family; KEGG: eci:UTI89_C5128 0.0022 putative tail length tape measure protein precursor K00924; COG: COG5280 Phage-related minor tail protein.
       0.770
EDS08646.1
Putative phage tail component domain protein.
  
    0.765
EDS08644.1
Hypothetical protein; KEGG: chu:CHU_2149 1.8e-05 CHU large protein; candidate retaining b-glycosidase, glycoside hydrolase family 5 protein K01238; COG: COG3468 Type V secretory pathway, adhesin AidA.
       0.760
PpiB
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
   0.656
EDS08655.1
Phage DNA packaging protein; COG: NOG22900 non supervised orthologous group.
  
   0.607
EDS08648.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.550
EDS08654.1
Putative phage head-tail adaptor.
       0.434
EDS08651.1
Phage major tail protein, phi13 family; COG: NOG11304 non supervised orthologous group.
       0.426
EDS08656.1
Hypothetical protein; COG: COG4653 Predicted phage phi-C31 gp36 major capsid-like protein.
       0.426
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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