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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS08644.1Hypothetical protein; KEGG: chu:CHU_2149 1.8e-05 CHU large protein; candidate retaining b-glycosidase, glycoside hydrolase family 5 protein K01238; COG: COG3468 Type V secretory pathway, adhesin AidA. (616 aa)    
Predicted Functional Partners:
EDS08647.1
Phage tail tape measure protein, TP901 family; KEGG: eci:UTI89_C5128 0.0022 putative tail length tape measure protein precursor K00924; COG: COG5280 Phage-related minor tail protein.
       0.784
EDS08646.1
Putative phage tail component domain protein.
       0.779
EDS08645.1
Phage minor structural protein, N-terminal domain protein; COG: COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase); Psort location: Cytoplasmic, score: 8.87.
       0.773
EDS08643.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.760
EDS08648.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.568
EDS08649.1
Hypothetical protein.
       0.426
EDS08650.1
Hypothetical protein; COG: NOG18353 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.426
EDS08651.1
Phage major tail protein, phi13 family; COG: NOG11304 non supervised orthologous group.
       0.426
EDS08652.1
Hypothetical protein; COG: NOG18352 non supervised orthologous group.
       0.426
EDS08653.1
Hypothetical protein; COG: NOG18351 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.426
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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