Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EDS08656.1Hypothetical protein; COG: COG4653 Predicted phage phi-C31 gp36 major capsid-like protein. (73 aa)    
Predicted Functional Partners:
EDS08657.1
Phage capsid family; COG: COG4653 Predicted phage phi-C31 gp36 major capsid-like protein; Psort location: Cytoplasmic, score: 8.87.
     0.989
EDS08655.1
Phage DNA packaging protein; COG: NOG22900 non supervised orthologous group.
 
 
 0.928
EDS08659.1
Phage portal protein, HK97 family; COG: COG4695 Phage-related protein; Psort location: Cytoplasmic, score: 8.87.
 
 
 
 0.903
clpP
KEGG: bca:BCE_0399 2.9e-54 clpP; ClpP protease family protein K01358; COG: COG0740 Protease subunit of ATP-dependent Clp proteases; Psort location: Cytoplasmic, score: 9.65; Belongs to the peptidase S14 family.
 
    0.885
EDS08654.1
Putative phage head-tail adaptor.
 
 
 0.871
EDS08661.1
COG: COG4626 Phage terminase-like protein, large subunit; Psort location: Cytoplasmic, score: 8.87.
 
     0.826
EDS08672.1
Hypothetical protein; COG: NOG11538 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
    0.815
EDS08651.1
Phage major tail protein, phi13 family; COG: NOG11304 non supervised orthologous group.
 
     0.810
EDS08652.1
Hypothetical protein; COG: NOG18352 non supervised orthologous group.
 
     0.807
EDS08650.1
Hypothetical protein; COG: NOG18353 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.805
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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