Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yhdJ_3DNA (cytosine-5-)-methyltransferase; KEGG: spa:M6_Spy1144 5.6e-106 adenine-specific methyltransferase K00571; COG: COG1475 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87. (417 aa)    
Predicted Functional Partners:
EDS08672.1
Hypothetical protein; COG: NOG11538 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
    0.948
EDS08669.1
Hypothetical protein; COG: NOG36032 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.888
EDS08668.1
Hypothetical protein; COG: NOG22899 non supervised orthologous group.
 
    0.813
EDS08673.1
HNH endonuclease domain protein; KEGG: eci:UTI89_C2987 9.0e-12 hypothetical protein K01157; COG: COG1403 Restriction endonuclease; Psort location: Cytoplasmic, score: 8.87; ORF located using Blastx.
 
  
 0.797
EDS08659.1
Phage portal protein, HK97 family; COG: COG4695 Phage-related protein; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.793
EDS08661.1
COG: COG4626 Phage terminase-like protein, large subunit; Psort location: Cytoplasmic, score: 8.87.
 
     0.781
EDS08671.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.773
EDS05370.1
Prophage LambdaSa04, DNA primase, P4 family; COG: COG3378 Predicted ATPase.
 
    0.770
EDS08657.1
Phage capsid family; COG: COG4653 Predicted phage phi-C31 gp36 major capsid-like protein; Psort location: Cytoplasmic, score: 8.87.
 
    0.765
EDS05497.1
Hypothetical protein; COG: COG4626 Phage terminase-like protein, large subunit; Psort location: Cytoplasmic, score: 8.87.
 
     0.729
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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