Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS08674.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (153 aa)    
Predicted Functional Partners:
EDS08672.1
Hypothetical protein; COG: NOG11538 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.768
EDS08656.1
Hypothetical protein; COG: COG4653 Predicted phage phi-C31 gp36 major capsid-like protein.
  
     0.703
EDS08673.1
HNH endonuclease domain protein; KEGG: eci:UTI89_C2987 9.0e-12 hypothetical protein K01157; COG: COG1403 Restriction endonuclease; Psort location: Cytoplasmic, score: 8.87; ORF located using Blastx.
 
     0.693
EDS08678.1
Hypothetical protein; COG: NOG14267 non supervised orthologous group.
 
     0.692
EDS08684.1
Hypothetical protein.
 
     0.691
EDS08657.1
Phage capsid family; COG: COG4653 Predicted phage phi-C31 gp36 major capsid-like protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.666
EDS08676.1
VRR-NUC domain protein; COG: NOG18350 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.665
EDS08675.1
KEGG: lwe:lwe1660 7.9e-21 DNA/RNA helicase protein K01529; COG: COG0553 Superfamily II DNA/RNA helicases, SNF2 family; Psort location: Cytoplasmic, score: 8.87.
 
     0.659
EDS07397.1
Phage major tail protein, phi13 family; COG: NOG22717 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.595
EDS08640.1
COG: COG4824 Phage-related holin (Lysis protein); Psort location: CytoplasmicMembrane, score: 9.26.
  
     0.588
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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