Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
drrA_2KEGG: fal:FRAAL2549 1.2e-34 antibiotic resistance ATP-binding protein K06020; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49. (242 aa)    
Predicted Functional Partners:
EDS08694.1
ABC-2 type transporter; COG: COG0842 ABC-type multidrug transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.968
zntR_1
Transcriptional regulator, MerR family; KEGG: eci:UTI89_C3737 3.2e-07 yhdM; Zn(II)-responsive regulator of ZntA; COG: NOG23448 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.881
EDS08693.1
Hypothetical protein; KEGG: ava:Ava_3862 0.00024 regulatory protein, MerR; COG: COG4978 Transcriptional regulator, effector-binding domain/component.
 
     0.636
nylB
Beta-lactamase; KEGG: mma:MM3157 3.4e-35 putative 6-aminohexanoate-dimer hydrolase; COG: COG1680 Beta-lactamase class C and other penicillin binding proteins; Psort location: Cytoplasmic, score: 8.87.
 
     0.503
hmrR
Transcriptional regulator, MerR family; KEGG: eci:UTI89_C3737 2.5e-06 yhdM; Zn(II)-responsive regulator of ZntA; COG: COG4978 Transcriptional regulator, effector-binding domain/component; Psort location: Cytoplasmic, score: 8.87.
 
     0.488
EDS05267.1
Pyridoxamine 5'-phosphate oxidase family protein; COG: COG3871 Uncharacterized stress protein (general stress protein 26).
  
     0.483
macB_3
ABC transporter, ATP-binding protein; KEGG: cch:Cag_0337 1.2e-50 ATPase K06020; COG: COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
    
0.470
EDS07133.1
Hypothetical protein; COG: NOG29223 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
 
 
 0.440
ytrA_3
KEGG: bcz:BCZK3833 5.5e-12 transcriptional regulator, GntR family; COG: COG1725 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
    0.430
EDS05454.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.415
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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