Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS08493.1Hypothetical protein; KEGG: eci:UTI89_C2238 5.7e-74 ibrA; hypothetical protein YbdN K00390; COG: COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase; Psort location: Cytoplasmic, score: 8.87. (446 aa)    
Predicted Functional Partners:
EDS08492.1
Hypothetical protein; COG: COG1475 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.966
EDS08494.1
Helicase C-terminal domain protein; KEGG: mbo:Mb2127 1.1e-13 helZ; probable helicase HelZ; COG: COG0553 Superfamily II DNA/RNA helicases, SNF2 family; Psort location: Cytoplasmic, score: 8.87.
       0.786
EDS08495.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.773
EDS08490.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.741
EDS08491.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.741
EDS08551.1
Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
  
     0.415
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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