STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS08498.1COG: COG4824 Phage-related holin (Lysis protein); Psort location: Cytoplasmic, score: 8.87. (145 aa)    
Predicted Functional Partners:
EDS08499.1
Hypothetical protein.
       0.775
EDS08500.1
Hypothetical protein.
       0.773
EDS07397.1
Phage major tail protein, phi13 family; COG: NOG22717 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.690
EDS08496.1
Hypothetical protein; KEGG: bcl:ABC1351 2.0e-16 xlyA; N-acetylmuramoyl-L-alanine amidase K01447; COG: COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase); Psort location: Cytoplasmic, score: 8.87.
       0.592
EDS08674.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.564
EDS08497.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.553
EDS08501.1
Hypothetical protein.
       0.551
EDS08656.1
Hypothetical protein; COG: COG4653 Predicted phage phi-C31 gp36 major capsid-like protein.
 
    0.542
EDS08672.1
Hypothetical protein; COG: NOG11538 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
    0.542
EDS08657.1
Phage capsid family; COG: COG4653 Predicted phage phi-C31 gp36 major capsid-like protein; Psort location: Cytoplasmic, score: 8.87.
 
    0.528
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.