Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS08509.1Hypothetical protein; KEGG: tpe:Tpen_0327 0.00020 ribose 5-phosphate isomerase; Psort location: Cytoplasmic, score: 8.87. (125 aa)    
Predicted Functional Partners:
EDS08510.1
Hypothetical protein.
       0.809
EDS08512.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.809
EDS08508.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.790
EDS08511.1
Hypothetical protein.
       0.773
EDS08513.1
Hypothetical protein; COG: NOG11102 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.762
EDS08514.1
Hypothetical protein; COG: NOG36366 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.700
EDS08506.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.653
EDS08505.1
Phage tail tape measure protein, TP901 family; KEGG: rno:113960 2.3e-07 Cdc42bpb; Cdc42 binding protein kinase beta K08286; COG: COG5283 Phage-related tail protein.
       0.626
EDS08504.1
Hypothetical protein.
       0.618
EDS08507.1
Hypothetical protein.
       0.618
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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