Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YhdJ_1DNA (cytosine-5-)-methyltransferase; KEGG: hit:NTHI1495 2.1e-76 modification methylase DpnIIB-like K00571; COG: COG0863 DNA modification methylase; Psort location: Cytoplasmic, score: 8.87; Belongs to the N(4)/N(6)-methyltransferase family. (281 aa)    
Predicted Functional Partners:
EDS08524.1
Hypothetical protein; COG: NOG13358 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.748
MboIIM_2
DNA (cytosine-5-)-methyltransferase; KEGG: spj:MGAS2096_Spy1124 6.6e-112 adenine-specific methyltransferase K00571; COG: COG0863 DNA modification methylase; Psort location: Cytoplasmic, score: 8.87; Belongs to the N(4)/N(6)-methyltransferase family.
  
     0.726
DpnM_1
D12 class N6 adenine-specific DNA methyltransferase; KEGG: bbr:BB3607 1.2e-23 modification methylase K06223; COG: COG0338 Site-specific DNA methylase; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.590
EDS08526.1
Hypothetical protein.
       0.561
EDS08527.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.516
EDS08529.1
Hypothetical protein.
       0.509
EDS08531.1
KEGG: mac:MA2894 0.00031 phosphoadenosine phosphosulfate reductase K00390; Psort location: Cytoplasmic, score: 8.87.
       0.493
EDS08530.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.479
Soj_1
Hypothetical protein; KEGG: cch:Cag_1803 3.7e-15 ATPase, ParA family K03496; COG: COG1192 ATPases involved in chromosome partitioning.
       0.479
yhdJ_4
KEGG: yps:YPTB1797 1.5e-64 putative DNA methyltransferase K07319; COG: COG0863 DNA modification methylase; Psort location: Cytoplasmic, score: 8.87; Belongs to the N(4)/N(6)-methyltransferase family.
  
     0.458
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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