Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
DpnM_1D12 class N6 adenine-specific DNA methyltransferase; KEGG: bbr:BB3607 1.2e-23 modification methylase K06223; COG: COG0338 Site-specific DNA methylase; Psort location: Cytoplasmic, score: 8.87. (275 aa)    
Predicted Functional Partners:
dam
KEGG: mta:Moth_1737 2.2e-63 DNA adenine methylase K06223; COG: COG0338 Site-specific DNA methylase.
 
  
 0.941
Dam
D12 class N6 adenine-specific DNA methyltransferase; KEGG: bbr:BB3607 8.9e-21 modification methylase K06223; COG: COG0338 Site-specific DNA methylase; Psort location: Cytoplasmic, score: 8.87.
  
  
 
0.908
EDS08529.1
Hypothetical protein.
       0.773
EDS08527.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.762
Soj_1
Hypothetical protein; KEGG: cch:Cag_1803 3.7e-15 ATPase, ParA family K03496; COG: COG1192 ATPases involved in chromosome partitioning.
   
   0.735
EDS08531.1
KEGG: mac:MA2894 0.00031 phosphoadenosine phosphosulfate reductase K00390; Psort location: Cytoplasmic, score: 8.87.
       0.727
EDS08530.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.723
EDS08526.1
Hypothetical protein.
       0.695
EDS08533.1
Hypothetical protein.
       0.629
EDS08534.1
Hypothetical protein.
       0.629
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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