Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS08539.1Hypothetical protein. (96 aa)    
Predicted Functional Partners:
EDS08540.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.793
EDS08541.1
COG: COG4712 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87.
       0.791
EDS08542.1
Hypothetical protein; COG: COG3481 Predicted HD-superfamily hydrolase.
       0.773
EDS08543.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.527
EDS08537.1
Hypothetical protein; COG: COG3935 Putative primosome component and related proteins; Psort location: Cytoplasmic, score: 8.87.
       0.510
EDS08538.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.510
EDS08536.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.488
EDS08544.1
Hypothetical protein.
       0.407
EDS08545.1
Hypothetical protein.
       0.407
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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