Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EDS08549.1DNA-binding helix-turn-helix protein; Psort location: Cytoplasmic, score: 8.87. (124 aa)    
Predicted Functional Partners:
EDS07358.1
DNA-binding helix-turn-helix protein; COG: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); Psort location: Cytoplasmic, score: 8.87.
  
     0.762
EDS08547.1
Hypothetical protein.
       0.527
EDS08548.1
Hypothetical protein.
       0.527
thyX
Hypothetical protein; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.
  
     0.507
EDS05490.1
KEGG: bca:BCE_3047 1.6e-05 glyoxalase family protein K01759; COG: COG0346 Lactoylglutathione lyase and related lyases.
  
     0.493
EDS08613.1
Hypothetical protein; COG: NOG39007 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.469
EDS08058.1
Hypothetical protein; COG: NOG34170 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.454
EDS07427.1
Hypothetical protein; KEGG: cpf:CPF_0724 0.0084 acetyltransferase, GNAT family K03826; COG: NOG36299 non supervised orthologous group.
  
     0.450
Noc
Hypothetical protein; KEGG: nwi:Nwi_0254 7.1e-05 helix-turn-helix, fis-type K00986; COG: COG1475 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
     0.400
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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