STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS08556.1COG: COG3428 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99. (503 aa)    
Predicted Functional Partners:
EDS08557.1
Hypothetical protein; COG: COG3402 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.988
hemE_3
Hypothetical protein; KEGG: mmp:MMP0831 4.3e-16 mtbA; uroporphyrinogen decarboxylase (URO-D) K00599; COG: COG0407 Uroporphyrinogen-III decarboxylase; Psort location: Cytoplasmic, score: 8.87.
  
    0.662
EDS07710.1
Hypothetical protein; KEGG: tfu:Tfu_0134 0.0010 inorganic H+ pyrophosphatase K01507; COG: COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.648
cshA
DEAD/DEAH box helicase; KEGG: eci:UTI89_C3590 4.4e-99 deaD, csdA, mssB, rhlD; cold-shock DEAD-box protein A K05592; COG: COG0513 Superfamily II DNA and RNA helicases; Psort location: Cytoplasmic, score: 8.87.
       0.576
EDS04950.1
Hypothetical protein; COG: COG4932 Predicted outer membrane protein.
  
     0.574
sppA
KEGG: bli:BL00425 1.7e-51 sppA; signal peptide peptidase K04773; COG: COG0616 Periplasmic serine proteases (ClpP class).
  
    0.541
EDS05358.1
Hypothetical protein.
  
     0.528
EDS08558.1
Hypothetical protein.
       0.506
EDS08554.1
Hypothetical protein; KEGG: tko:TK0067 3.5e-10 nicotinamide mononucleotide adenylyltransferase K00952; COG: COG1056 Nicotinamide mononucleotide adenylyltransferase; Psort location: Cytoplasmic, score: 8.87.
 
     0.482
EDS06499.1
Hypothetical protein.
 
     0.461
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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