Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EDS08557.1Hypothetical protein; COG: COG3402 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87. (169 aa)    
Predicted Functional Partners:
EDS08556.1
COG: COG3428 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.988
sppA
KEGG: bli:BL00425 1.7e-51 sppA; signal peptide peptidase K04773; COG: COG0616 Periplasmic serine proteases (ClpP class).
 
    0.597
cshA
DEAD/DEAH box helicase; KEGG: eci:UTI89_C3590 4.4e-99 deaD, csdA, mssB, rhlD; cold-shock DEAD-box protein A K05592; COG: COG0513 Superfamily II DNA and RNA helicases; Psort location: Cytoplasmic, score: 8.87.
       0.560
EDS08558.1
Hypothetical protein.
       0.506
mta_3
TipAS antibiotic-recognition domain protein; KEGG: syn:sll0794 6.4e-06 corR, merR, cobH, cbiC; cobalt-dependent transcriptional regulator (MerR (mercuric resistance operon regulatory protein)-like domain in N-terminal half), precorrin isomerase, Precorrin-8X methylmutase (in C-terminal half) K01833; COG: COG0789 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
 
     0.419
EDS08554.1
Hypothetical protein; KEGG: tko:TK0067 3.5e-10 nicotinamide mononucleotide adenylyltransferase K00952; COG: COG1056 Nicotinamide mononucleotide adenylyltransferase; Psort location: Cytoplasmic, score: 8.87.
       0.408
hemE_3
Hypothetical protein; KEGG: mmp:MMP0831 4.3e-16 mtbA; uroporphyrinogen decarboxylase (URO-D) K00599; COG: COG0407 Uroporphyrinogen-III decarboxylase; Psort location: Cytoplasmic, score: 8.87.
  
     0.402
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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