close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
deoD_1Phosphorylase family; KEGG: fal:FRAAL4002 2.1e-37 putative purine-nucleoside phosphorylase; COG: NOG30060 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (254 aa)    
Predicted Functional Partners:
YfiR
Transcriptional regulator, TetR family; COG: COG1309 Transcriptional regulator; Psort location: Cytoplasmic, score: 8.87.
 
     0.839
EDS08065.1
Hypothetical protein.
       0.645
cdd
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
  
  
 0.625
mprF
Hypothetical protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms.
       0.590
pdaA_1
Polysaccharide deacetylase; KEGG: bha:BH1917 8.4e-25 notB; chitooligosaccharide deacetylase K01463; COG: COG0726 Predicted xylanase/chitin deacetylase; Psort location: Cytoplasmic, score: 9.65.
       0.584
UgtP
Monogalactosyldiacylglycerol synthase, C-terminal domain protein; KEGG: btl:BALH_0448 1.0e-33 ugtP; 1,2-diacylglycerol 3-glucosyltransferase K03429; COG: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; Psort location: Cytoplasmic, score: 8.87.
       0.584
ydaF
Acetyltransferase, GNAT family; KEGG: bth:BT4506 9.0e-24 putative acetyltransferase K03827; COG: COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; Psort location: Cytoplasmic, score: 8.87.
 
      0.543
EDS08066.1
Hypothetical protein; COG: NOG14690 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.476
EDS08058.1
Hypothetical protein; COG: NOG34170 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.453
EDS08067.1
Hypothetical protein.
       0.411
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.