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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS08065.1Hypothetical protein. (43 aa)    
Predicted Functional Partners:
deoD_1
Phosphorylase family; KEGG: fal:FRAAL4002 2.1e-37 putative purine-nucleoside phosphorylase; COG: NOG30060 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.645
YfiR
Transcriptional regulator, TetR family; COG: COG1309 Transcriptional regulator; Psort location: Cytoplasmic, score: 8.87.
       0.645
EDS08066.1
Hypothetical protein; COG: NOG14690 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.562
mprF
Hypothetical protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms.
       0.493
pdaA_1
Polysaccharide deacetylase; KEGG: bha:BH1917 8.4e-25 notB; chitooligosaccharide deacetylase K01463; COG: COG0726 Predicted xylanase/chitin deacetylase; Psort location: Cytoplasmic, score: 9.65.
       0.493
UgtP
Monogalactosyldiacylglycerol synthase, C-terminal domain protein; KEGG: btl:BALH_0448 1.0e-33 ugtP; 1,2-diacylglycerol 3-glucosyltransferase K03429; COG: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; Psort location: Cytoplasmic, score: 8.87.
       0.493
EDS08067.1
Hypothetical protein.
       0.480
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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