Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS08135.1Hypothetical protein; COG: COG3965 Predicted Co/Zn/Cd cation transporters; Psort location: CytoplasmicMembrane, score: 9.75. (194 aa)    
Predicted Functional Partners:
EDS04944.1
Hypothetical protein; KEGG: rle:RL2226 0.0022 cdsA; putative phosphatidate cytidylyltransferase K00981; COG: NOG07239 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.646
EDS07555.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.26.
  
     0.604
EDS08136.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.572
EDS04850.1
BNR/Asp-box repeat protein; COG: NOG23158 non supervised orthologous group.
  
     0.525
EDS05808.1
Hypothetical protein; KEGG: sth:STH773 0.0082 ribose ABC transporter ATP-binding protein K02056; COG: COG1879 ABC-type sugar transport system, periplasmic component.
  
     0.430
EDS06626.1
Hypothetical protein; Belongs to the sulfur carrier protein TusA family.
  
     0.417
EDS08034.1
KEGG: ljo:LJ1840 0.0063 cell wall-associated serine proteinase K01361; COG: NOG22929 non supervised orthologous group; Psort location: Cellwall, score: 9.99.
  
     0.406
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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