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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS08165.1Radical SAM-linked protein; KEGG: sat:SYN_01355 3.7e-10 Fe-S oxidoreductase; COG: COG5011 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87. (242 aa)    
Predicted Functional Partners:
EDS08164.1
Radical SAM domain protein; KEGG: ctc:CTC02064 5.7e-177 Fe-S oxidoreductase; COG: COG1032 Fe-S oxidoreductase; Psort location: Cytoplasmic, score: 8.87.
    0.996
EDS08166.1
Radical SAM domain protein; KEGG: reh:H16_A0887 1.6e-30 splB1; DNA repair photolyase K01669; COG: COG1533 DNA repair photolyase; Psort location: Cytoplasmic, score: 8.87.
       0.773
YbaK
YbaK/EbsC protein; COG: COG2606 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
       0.697
EDS05781.1
Putative FeS-containing Cyanobacterial-specific oxidoreductase; COG: COG1625 Fe-S oxidoreductase, related to NifB/MoaA family; Psort location: Cytoplasmic, score: 8.87.
  
     0.622
hisE
phosphoribosyl-ATP diphosphatase; KEGG: sao:SAOUHSC_03008 3.6e-56 imidazole glycerol phosphate synthase subunit HisF, putative K01663; COG: COG0139 Phosphoribosyl-AMP cyclohydrolase; Psort location: Cytoplasmic, score: 9.98; In the C-terminal section; belongs to the PRA-PH family.
       0.499
rfbD-2
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
       0.492
gltP
Transporter, dicarboxylate/amino acid:cation Na+/H+ symporter family protein; KEGG: eci:UTI89_C4668 1.6e-67 gltP; glutamate-aspartate symport protein K03309; COG: COG1301 Na+/H+-dicarboxylate symporters; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
       0.485
EDS08173.1
COG: COG2868 Predicted ribosomal protein; Psort location: Cytoplasmic, score: 8.87.
  
    0.473
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.452
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
       0.448
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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