Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDS08166.1Radical SAM domain protein; KEGG: reh:H16_A0887 1.6e-30 splB1; DNA repair photolyase K01669; COG: COG1533 DNA repair photolyase; Psort location: Cytoplasmic, score: 8.87. (297 aa)    
Predicted Functional Partners:
EDS08164.1
Radical SAM domain protein; KEGG: ctc:CTC02064 5.7e-177 Fe-S oxidoreductase; COG: COG1032 Fe-S oxidoreductase; Psort location: Cytoplasmic, score: 8.87.
       0.773
EDS08165.1
Radical SAM-linked protein; KEGG: sat:SYN_01355 3.7e-10 Fe-S oxidoreductase; COG: COG5011 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87.
       0.773
YbaK
YbaK/EbsC protein; COG: COG2606 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
       0.696
rfbD-2
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
       0.501
gltP
Transporter, dicarboxylate/amino acid:cation Na+/H+ symporter family protein; KEGG: eci:UTI89_C4668 1.6e-67 gltP; glutamate-aspartate symport protein K03309; COG: COG1301 Na+/H+-dicarboxylate symporters; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
       0.485
EDS05267.1
Pyridoxamine 5'-phosphate oxidase family protein; COG: COG3871 Uncharacterized stress protein (general stress protein 26).
 
     0.433
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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