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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS08184.1ABC-2 type transporter; COG: COG0842 ABC-type multidrug transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99. (256 aa)    
Predicted Functional Partners:
thiQ
KEGG: bur:Bcep18194_A3518 4.1e-23 ABC transporter, ATPase subunit K01990; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
       0.827
cssS_2
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: spr:spr0529 4.9e-31 vncS; VncS, histidine kinase; COG: COG0642 Signal transduction histidine kinase.
  
    0.578
SrrA_4
KEGG: eci:UTI89_C2354 7.9e-29 baeR; transcriptional response regulatory protein BaeR K07664; COG: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Psort location: Cytoplasmic, score: 9.98.
       0.538
EDS08189.1
Hypothetical protein.
       0.538
TtcA
PP-loop family protein; KEGG: reh:H16_A0260 3.2e-32 predicted ATPase of the PP-loop superfamily implicated in cell cycle control K01529; COG: COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; Psort location: Cytoplasmic, score: 8.87; Belongs to the TtcA family.
       0.411
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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