Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lytGMannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; KEGG: cno:NT01CX_2157 9.9e-26 N-acetylmuramoyl-L-alanine amidase CwlL precursor (cellwall hydrolase) (autolysin) K01446; COG: COG1705 Muramidase (flagellum-specific); Psort location: Extracellular, score: 9.55. (500 aa)    
Predicted Functional Partners:
EDS08221.1
Toxin secretion/phage lysis holin; Psort location: CytoplasmicMembrane, score: 7.80.
       0.793
ltrA_3
Reverse transcriptase (RNA-dependent DNA polymerase); KEGG: rba:RB818 3.0e-25 reverse transcriptase/maturase K00986; COG: COG3344 Retron-type reverse transcriptase; Psort location: Cytoplasmic, score: 8.87.
       0.780
LytF
NlpC/P60 family protein; KEGG: psp:PSPPH_0470 1.7e-17 NLP/P60 family protein K01183; COG: COG0791 Cell wall-associated hydrolases (invasion-associated proteins); Psort location: Extracellular, score: 9.95.
  
  
 0.661
ripA
NlpC/P60 family protein; KEGG: bce:BC5234 1.5e-12 N-acetylmuramoyl-L-alanine amidase K01446; COG: COG0791 Cell wall-associated hydrolases (invasion-associated proteins); Psort location: Extracellular, score: 9.95.
  
  
 0.661
mepM_1
KEGG: cya:CYA_1627 1.7e-20 peptidase, M23B family; COG: COG0739 Membrane proteins related to metalloendopeptidases.
     
 0.593
cwlC_1
KEGG: bsu:BG10825 1.1e-31 cwlC; N-acetylmuramoyl-L-alanine amidase, peptidoglycan hydrolase, LytC amidase family K01448; COG: COG0860 N-acetylmuramoyl-L-alanine amidase; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.567
EDS08637.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
 
     0.557
EDS08647.1
Phage tail tape measure protein, TP901 family; KEGG: eci:UTI89_C5128 0.0022 putative tail length tape measure protein precursor K00924; COG: COG5280 Phage-related minor tail protein.
 
     0.517
EDS08645.1
Phage minor structural protein, N-terminal domain protein; COG: COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase); Psort location: Cytoplasmic, score: 8.87.
 
     0.479
miaB
tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
       0.479
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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