STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDS08230.1Hypothetical protein; Psort location: Extracellular, score: 8.82. (68 aa)    
Predicted Functional Partners:
EDS08228.1
Putative phage tail component domain protein; COG: NOG18823 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.775
EDS08226.1
Hypothetical protein; COG: NOG18825 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.774
EDS08227.1
Hypothetical protein; COG: NOG18824 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.774
EDS08229.1
Phage tail tape measure protein, TP901 family; KEGG: mmu:19360 0.0048 Rad50; RAD50 homolog (S. cerevisiae); COG: COG5280 Phage-related minor tail protein.
       0.773
EDS08225.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.727
EDS08224.1
Hypothetical protein; KEGG: cta:CTA_0154 0.0092 serine/threonine-protein kinase PKN1 K00924; COG: COG1262 Uncharacterized conserved protein.
       0.693
EDS08231.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.572
EDS08223.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.553
EDS08232.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.476
EDS08234.1
Hypothetical protein; COG: NOG18351 non supervised orthologous group.
       0.450
Your Current Organism:
Clostridium scindens
NCBI taxonomy Id: 411468
Other names: Clostridium scindens ATCC 35704, [. scindens ATCC 35704, [Clostridium] scindens ATCC 35704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.